Dammit, I didn't get that. Odd that it kept all of my Origin choices from a Witch Hunt import, but no Awakenings choices despite going through Awakenings.
Unfortunately I only had a Witch Hunt & Golems of Angarrak save. At least it read my Origins choices from the Witch Hunt save.
I'm in the process of replaying Origins with a different character so I'll make sure to have Origins and Awakenings ending saves. I'm kind of in hiatus from Origins though as I don't really feel like replaying DA 2 again until it receives a patch. While they can't fix the repeating dungeons/caves, hopefully they will fix some of the quest bugs and add auto-attack to the console version. DA 2 killed my hand and I'm in no hurry to mash the A-button a million more times.
Save importing is bugged. I imported Witch Hunt save and majority of my choices in DAO and Awakening were imported wrong. Amaranthine burned even if I saved it, I didn't romance anyone even if I did, "Finding Nathaniel" quest doesn't trigger (in Act 2, if you get the quest from the dwarf to find his missing sons from The Deep Roads, then you won't get Nathaniel quest) etc. You can check your plot flags with console command "runscript zz_vault_debug". I read from Bioware forums that it's Awakening that is causing all the save import problems.