Depending on how it goes you can hack it to just clear the malware, hack it to get a copy of a nice lethal quickhack (synapse burnout if I recall), or both.
If you go through the mission and I think its on one of the laptops you can read the message that does identify that guy from Meredith's trunk as the mole, in which case potentially terminates him. Without it, there's no proof, and as long as you don't start anything with Royce she doesn't recover the convoy and that's why she's terminated.
I went with rescuing Brick as well, haven't seen any direct consequences of that, but I'm guessing his favour owed might turn up in the end game sequence.
Actually hit level 41 now, about 76 hours of gameplay and still pootling around in act 2 doing side gigs and the like. There are some interesting and disturbing elements that crop up in equal measure.
Although I am annoyed that there are a couple of missions you can only do if you basically play stupid. It's that awkward "right, do I roleplay this and not get into it and skip the content, or do I close my eyes and just act like a naive moron with no clue just to explore the mission and what might come out of it..."
Hm, just had the River romance pop up. I have to admit, compared to meeting Judy and Panam, and how those relationships are more fleshed out before romance creeps in, River as the male to female V's hetero option seems surprisingly shallow. The first mission where he's somewhat antagonistic, the second where you help him rescue his nephew from a serial killer type, and then boom "Hey, I want to date you" kind of thing. Made it very easy to do the "Dude, we're friends, that's it. Let's get drunk and enjoy the view."