Started a new game on Beta 86, though before entering the ship, Beta 89 came out so I'm actually on that.
When entering my ship for the first time, the following happened:
Unfortunately I overwrite the save where it happened and having tried to recreate it, I failed (second attempt everyone was positioned as normal):
I can tell you that eventually they moved away from that spot and all was well again (so very minor).
One more thing:
On my previous playthroughs I received a dark grey cloak:
This time however, I got the royal deadfire company cloak:
No idea if this is intended and part of the "poe1 import fixes"? (I always import my game)
But it was something new so I figured I'd add it
-edit
To clarify, the cloak is the one you get when you first enter your ship.