I don't think it'll make the game too easy. For one, you'll have to buy stuff to make it do certain things, and you'll have to earn that money first. And survive the inevitable raids and whatnot that'll rob you of your hard-earned money before you manage to save up. By the time you get certain upgrades, the bonus they provide won't be exactly meaningless, but definitely not as important as it would have been at lower levels, back when you started drooling over it.
Sure, I expect the bonuses to make a difference, but not more so than, say, magic items that you get to keep on the entire time.
And let's not forget about planning. The stronghold bonuses will be temporary, and it can be rather inconvenient if they run out just before you needed them...