Throughout the game she was one of my more trusted people but I was still a little cautious and wondering what agenda she might have and if she was working for another organization, especially after that intercepted email from the NSA about a deep mole contacting them. Which were not unfounded as I found out later in the game
Exactly, I also unlocked her dossier 100% and the secret fact and also learned *Spoilers* that she was the one that made you rogue. Should I trust Parker, or shouldn't I? This game has so many shades of Grey it's awesome =D
Well, if you have a good relationship with her, Mina even tells you herself that she was the one who forced you into Alpha Protocol at the beginning. It also didn't seemed like she enjoyed deceiving you, in contrary seems rather regretful and I don't think she's faking this.
But when she confessed it I must admit that I was a little unsure what to think of it, but after giving it some thought I wasn't angry at her. I mean
a) she did it for a good cause
b) if she hadn't done it you would be either working for an organization that was fulfilling Leland's plans or dead, if the missiles were sent by Leland/AP and meant to be lethal
And about those missiles:
Not sure about that, I haven't talked to Parker about that yet only about Madison after which he ended the transmission.
But I'm not sure how much I would trust Parker on this - he seems not like the bluffing type, but considering he's the initial mole for Leland and was pivotal in transforming AP into Leland's tool... not very much i guess. But next time I'm gonna try to talk about the missiles with Parker and we'll see what I think of it then.