I agree that there are too many godlikes. I wouldn't be surprised if Obsidian decreased the number of actual Godlike NPCs they put into the game to balance out the count a bit more.
Missing Guards- Upon discovering and killing the guards in Heritage Hill, there is no acknowledgement of it and I have no further dialogue with Wyde on the subject, as if I had done nothing else.
At All Costs- Upon returning to the merchant, siding with him or killing him put the quest in limbo, and he acts as if I had yet to deliver the goods.