Same, not getting any chievements since 2.00, for example already have new companions but haven't unlocked Fish Guts and Murder, opened Durgan's Battery but didn't unlock Watcher at the Breach.
https://www.dropbox.com/s/p3ap98ztliuy8er/c1c9b2daa1f94d859db9222c20d153e7%2033540820%20CaedNua.savegame?dl=0