This is a bug that happened after 1.0.3. It worked in 1.0.2 so it seems to be a bug.
The problem: Changes from console command "skill" does not persist; every time i reload the game, the changes get reverted.
I want to change the player stealth to 10
1.) Enalbe the cheat console by typing in "iroll20s"
2.) Change the stealth-skill by typing in "skill player stealth 10"
3.) Look at the character screen: stealth got changed to 10 (or more if you have some bonuses or set some points in it already)
Until here it works. Now here comes the bug:
4.) Save the game
5.) Load the game
6.) Look into the character screen: the changes to the stealth-skill got reverted to the previous value.
In 1.0.2 it worked and the change didn't get reverted after a reload. In 1.0.3 sadly this isn't the case anymore. So to use my personal settings i need to type in the command every time i play the game.