Hmm I seem to be having isues trying to load the save file, even after windows compresses it says the file is too large to upload.
I will say however that I've noticed when I went to other places in the game some of them their maps were also dark with all the map notes gone while event scripted events such as the mob appearing at your stronghold angry about the 'crop taxes' and the ghosts both at your stronghold and Durgan's battery are reappearing each time I visit those areas.