I agree with the original post, there just wasn't an ending.
I played with Exile as LS Male.
First, how did Mira end up face planted at Malachor V? Since the Exile has just passed by the spot Mira shows up at, why didn't he see her? Previous Kreia dialog mentions that Kreia will take Hanharr to where Mira will be, but for what purpose? By this time, most of the crew is Jedi, and Mira may or may not be Jedi at this time, so why pick on Mira? Did Kreia just know this or did she kidnap Mira? The last time you see Mira, you see her walking through the large beast gate, which isn't too far from the academy entrance that the Exile has just reached. Her last bit of dialog implies she will be a part of the final sequence, but you neve see her or any of the NPC's again.
The remote and goto's bot are in a wait and see state, so that's not too bad.
At the end, Kreia mentions 4 ending choices in her dialog, but it's just 2 endings and these 2 endings are already set based on light side / dark side. One of the choices is for the Exile to go to one of the orbiting ships, but where's the shuttle? Had to be at least one, for Kreai, Sion, and Hanharr to be there. Then again, the actual endings just ignore the orbiting ship part anyway.
At the start of Malachor V, they missed the obvious of having the Exile in the Ebon Hawk, and using the lift to get out as was done in the prologue.
"Ship crashes yet again" was getting overdone by this point. It didn't add anything to the plot line, and ends up getting ignored anyway.
Then there's the miraculous repair job on the Ebon Hawk as it reappears in the light side ending. At the start of the Exile or remote sequence on Malachor V, you can climb onto the Ebon Hawk, using the same paths as the prologue on the near side (can't go down on the far side though). There's a big chunk of the far side gone, big holes, the nearest two over the missing chunk of ship.