Stillquest,
I have the same problem you did, fast aloth, slow fox. I believe it happend during one of the first sets of bounties fights. If you've got a running fix, would you mind posting it and I can save you the trouble of fixing some one elses save? Thanks for doing all this.
Pure curiosity - I was a programmer turned medical student - what are you using for your edits and to read the save files?
Thanks again.