I don't know about whining. I have yet to defeat the end boss so I don't know what happens exactly in terms of the ending.
I do think it's a little odd that the game shipped with something as weird as GO-TO destroying Bao-Dur's remote aboard the Ebon Hawk only to later see that the Remote is perfectly fine...
I could never really get good INF with Bao-Dur throughout the game until I healed the sick guy on Nar Shaddaa. Then, went I went back to the Ebon Hawk I got 3 cut scenes in a row with him fixing the droids and another diaglogue tree with him. Very weird.