Progress!
So I had originally downloaded the 1.1 patch when I bought and downloaded the game. I then applied it and found the game completely not working. Fresh re-install, and then I went through the activation mess.
Since then, while looking for more answers, I found a patch on the SEGA website that was labeled for foreign countries and digital download, but also version 1.1, so I downloaded this as well.
Since I figured it could not hurt, I installed this patch. Start up game, and what do you know, it worked like a charm. Now, at this point I was never asked for an activation code, so as far as I know, my game is still not activated. I can't say that this patch is legal to use in the US.
Bottom line for me, it made it so I can actually play the game I paid for. Hope this helps.
Alpha Protocol patches
Belgarath the Ancient One