I'm playing through the XBOX version at the moment. I'm not entirely sure this is a glitch or an oversight but it's particularly annoying at any rate.
On Naa Shadar you fight the Twin Suns with Atton and the Red Eclipse guys on the Ebon Hawk. I defeated the Twin Suns (Hard fight) and it immediately loads the next part of the game. You don't get a chance to pickup their gear. Same goes for the Red Eclipse Boss Cahhmakt when you beat him - it loads the next scene straight away - no follow up and no chance to pickup any of the gear that might be strewn around the ship from your battles.
Has anyone else noticed this? It's incredibly annoying!