1st BUG: First bug is regarding the quest "Family pride".
If you kill Ezzali Bardatto before getting the "kill them all" order from valeras, the quest gets stuck since Ezzali is already dead. Save file for this is attached.
This bug was present before patch 2.1 Link: https://forums.obsidian.net/topic/103145-family-pride-ive-been-told-to-kill-the-bardattos-but-theyre-already-dead/
2nd BUG: If you steal Rinco's purse from Mokeha and give it to Rinco, you will still have the purse full of money in your inventory in quest items tab. I do not have any save file for this.
3rd BUG: If you change your party members in any tavern (checked in The Hole and in the Inn in Neketaka Harbor ), the new party members seems to spawn at the far corner of the room. This bug probably started from this patch.
Save File Link: https://drive.google.com/open?id=1u2Z0kDcS1ySTtt4vtJvrjZ4PNDKN-aei
P.S. Is it possible to modify the save file to make the quest completed or respawn Ezzali since I do not have any save file prior to killing her.