First off, I am new to these forums, and do not know if this issue had already been posted. I am sorry if it has been but I do not know where else to turn.
My problem works mostly like this: Some of my party members are negatively affected by my alignment. It is a strange mathematical model I do not have the patience to sort out. But their alignment has it so that when my alignment is at halfway or below, they are fully light side, and the more light side points I get past the half way point, the more their alignment goes down. They would be in the middle if my alignment was at halfway between the middle and full light side (think 75% if the scale), and me being fully light side will make them fully dark side. Cheats will not work on them, I can only lower their alignment and bring it back up again, it can't go past the point dictated by my alignment. I only have Atton, Bao-Dur, Visas, T3-M4, Kreia, and the Handmaiden at this point, and strangely, only Atton, Bao-Dur, and T3-M4 have this problem. Stranger still, this affects every single party member while I am on the Ebon Hawk, but it does not affect Visas, Kreia, and the Handmaiden outside the Ebon Hawk. They return to the alignment they had previously.
UPDATE: Well, now this really sucks. I just helped a guy on Nar Shadaa with the Handmaiden and Visas, I gained some light side points, and now they have the problem too! I did reload the game, and I played without getting light side points for awhile, but then I leveled up which gave them the problem.