I am having this issue as well on the PC version, and I cannot move foward in the game at all.
I got in the Jedi base and did the talks with Atris, her handmaidens and that whole thing. But when it comes time to leave, I seem screwed. The entire time, Kreia and Atton stand by the enterance and never have that conversation I read was supposed to happen, and when I talk to Atton I get a menu that has two "Cheat Node" options. (i have never once used a cheat in this game so i am not sure what that is all about) Talking to Kreia does absolutely nothing. T3-M4 gives me regular chat options like, "make me a computer spike" and "let me work on you", but I can find NO way to free him. Bao-Dur is out cold, and I cannot speak to, nor free him. And I cannot board the Ebon Hawk, as I am told I need my party members to proceed.
This is really stupid and ruins the game. I hate using mods and cheats with games like this, but I may have to seek out that restoration thing. I find it really stupid that I should have to turn to a 3rd party to proceed in your game. I hope this is patched, pronto.
Oh, and as a side complaint, you need to work something out with ATi and get those issues straight.
Maybe you should put those hi-res movies on hold and fix this other stuff first. Movies do me no good if I can't advance in the game.