I have this exact problem. Basically, I've been told that the "fix" is to not fight the handmaidens or, if you're hell-bent upon fighting them, don't release Kreia and Atton (or whatever their names are) until after you've finished fighting them. Of course, nobody thought to look for something potentially wrong with every action they take until after something wrong actually happened.
The problem is that there is supposedly another cinematic involving your entire crew on-board the Ebon Hawk. Only problem with that is, your crew is still on Telos. Thus, no cinematic. Disabling cinematics does *NOT* work, from what I have tried.
Bottom line: Unless you saved before you fought the handmaidens (or, at the very least, before you freed your crew), you're screwed until Obsidian makes an actual patch to fix this glitch. That'll probably be any month now.
Nield Rankosa
Victim of the stupidity glitch